Baseball America has their 'Best Tools' survey up (subscription required) and there are a few Blue Jay farm hands on the list.
In the PCL:
Best Baserunner: Anthony Gose (but he didn't win fastest baserunner, Adam Eaton won that).
Best Defensive Shortstop: Adeiny Hechavarria. He's listed as their 'Easy Call'.
Best Infield Arm: Adeiny Hechavarria . After watching him, these past few games, I believe it
Best Defensive Outfielder: Anthony Gose.
Best Outfielder Arm: Moises Sierra.
In the Eastern League:
Best Defensive Third Baseman: Mark Sobolewski.
Best Hitting Prospect: Kevin Pillar.
Best Pitching Prospect: Aaron Sanchez.
Best Changeup: Justin Nicolino.
Best Reliever: Ajay Meyer.
No Dunedin players made list in the Florida State League.